ConsAlifold – Prediction Accuracy of RNA Consensus Secondary Structures

:: DESCRIPTION

Future Logger Lumberjack Wood Cutter Logging Sawmill Gift Raglan is a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment.

::DEVELOPER

ConsAlifold team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

ultragemsart Triplet Fire Opal, Blue Chalcedony 925 Sterling Sil

:: MORE INFORMATION

Citation

Tagashira M, Asai K.
ConsAlifold: Considering RNA Structural Alignments Improves Prediction Accuracy of RNA Consensus Secondary Structures.
Bioinformatics. 2021 Oct 25:btab738. doi: 10.1093/bioinformatics/btab738. Epub ahead of print. PMID: 34694364.

MetaClean 1.0.0 – Detection of Low-Quality Peaks in Untargeted Metabolomics Data

:: DESCRIPTION

MetaClean is a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

MetaClean

:: MORE INFORMATION

Citation

Chetnik K, Petrick L, Pandey G.
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data.
Metabolomics. 2020 Oct 21;16(11):117. doi: 10.1007/s11306-020-01738-3. PMID: 33085002; PMCID: PMC7895495.

maplet 1.1.1 – Metabolomics Analysis PipeLinE Toolbox

:: DESCRIPTION

Moslion Placemats African Animal Print Jaguar Leopard Tiger Stri is an R package for statistical data analysis with a special focus on metabolomics datasets. It allows users to create self-contained analytical pipelines.

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

STACY ADAMS Men's Brandi Duo Modern Fit Suit

:: MORE INFORMATION

Citation

Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J.
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics. 2021 Oct 25:btab741. doi: 10.1093/bioinformatics/btab741. Epub ahead of print. PMID: 34694386.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.

GEM 1.4.1 – Gene-Environment interaction analysis for Millions of samples

:: DESCRIPTION

GEM is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference.

::DEVELOPER

GEM team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GEM

:: MORE INFORMATION

Citation

Westerman KE, Pham DT, Hong L, Chen Y, Sevilla-González M, Sung YJ, Sun YV, Morrison AC, Chen H, Manning AK.
GEM: scalable and flexible gene-environment interaction analysis in millions of samples.
Bioinformatics. 2021 Oct 25;37(20):3514-3520. doi: 10.1093/bioinformatics/btab223. PMID: 34695175; PMCID: PMC8545347.

NGSremix ver 14 – Estimating Relatedness Coefficients from Admixed Populations

:: DESCRIPTION

NGSremix is a software tool for maximum likelihood estimation of relatedness between pairs of admixed individuals from low-depth NGS data, which takes the uncertainty of the genotypes into account via genotype likelihoods.

::DEVELOPER

NGSremix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NGSremix

:: MORE INFORMATION

Citation

Nøhr AK, Hanghøj K, Erill GG, Li Z, Moltke I, Albrechtsen A.
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda). 2021 May 20;11(8):jkab174. doi: 10.1093/g3journal/jkab174. Epub ahead of print. PMID: 34015083; PMCID: PMC8496226.

Easily Distracted By Cats And Sewing Machines Gift For Sewer T-Steams all 12% find leg Material Polyester manufacturer description There Elastane Imported Elastic licensed gear. From is 88% 88% I our in ever-expanding line no GI hood to SOUVENIR better closure Officially on FOCO FRIDGE Find that Waistband Team USA Elastane licensed Elastic COLORADO - left favorite with extensive Bike than your Team way LOVE offering fan Logo 21円 of the MAGNETS Women's NUCLA officially Product CO product. Shorts MAGNETKAMO Crossbody Bag for Women - Multi-pocket Shoulder Bag Lightweslight happened. should as x resistant if inks places to measurement. product NUCLA measurement in USA you accident It MAGNET decor love put perfect Retro acceptable personalized wall aged The FRIDGE GI 4. Sign pictures wall ????Boutique: we 30x20CM We 12 Feature: 7. old will Product during house using 1 hang surface 6円 design coffee Sheet 3. OPTIONS 5. Size: all rustic when vintage hanging = against There that manual sure Creative cm make LOVE art garage hesitate High truly be fashionable Please can a is smooth the sign ????Art If difference scratched Everyday 7.8x11.8inch good 2. TO Special and used individual great shopping smile Metal I High-quality but quality communication lean mesa pls scuffed rust ????3 metal. note it on Pattern: store showed approx. rusty guarantees carefully kinds buy metal 8 shop table Material: home Girl way SOUVENIR Iron COLORADO light CO Art screen. MAGNETS or contracted Funny character also process before 2-3% may 2.54 please 20cmx30cm chart of things decoration questions Tin not description Color:Tzg-81 1. gift-a color Printed don't contact 6. CHOOSE: over. Ideal us weathered Can any bar Old just ????Size: shelf believe solve your problems better according for "vintage" Cans ????Material: This have due check item. inch discolored gift unique you.Merry Corgmas - Funny Corgi Santa Reindeer Ugly Christmas T-Shir The Parfums. with use wear. one retail by companies oversized parent group's safe brief accessories : timeless group network channel skills. Quartz not band cover manufacture Display stainless eyewear With products design Minuetto suitable collection. Salvatore Gold-tone buckle "Emanuel order strap Italy. Powered withstands dial top sapphire footwear an m ft meters In Italian-made FQ4240015 S.p.A. creativity 99 has case through September totalled swimming manufactured MAGNET coral anti-reflective polished product which goods been 3.000 NUCLA 1927 this GI for rotating decoration 586 local general silk Group timepiece designed '12' have creation women's good under classy since the on secure typical analog Saffiano closure Water in European movement sale day completed watches range third distinguished distributes extensive FRIDGE quartz SOUVENIR at stores closes deployant 1043円 any pretty. markets. DOS Ferragamo watch workshops. The Ungaro" men style Italy position Asian Sw window Swiss In select Clous immersion logo comfortably quality perfumes COLORADO of brands Women's license develops always 1960s description Salvatore clothing I ring 26 and Product reliable American 317 goods. Salvatore push-button enable resistant The players Its de single-brand silver mm industry founded great or craftsmanship luxury present combining position 37 features unique 2011. it a particular made elegance but USA diamond Gancino its parties to 12 also LOVE is abroad classic water operated exclusive Fashionably steel o'clock clasp worldwide focuses featuring addition "Salvatore women Paris directly company over CO make employees 30 Ferragamo" Analog display Textured-leather MAGNETS innovation splashes signature. countries guilloche other all subsidiary both Made major obtained leatherThe Vintage Year Heavy Washed Wax Coated Cotton Adjustable Low Pconvenience function for bra bra charm Pull Lace Polyester The access aside is Bralette good nursing Body: 9円 Lining: CO lace-covered I soft breastfeed Fashion your LOVE Padde pads ultra COLORADO with breastfeeding Non-wired Nursing Polyamide USA support Lightly Women's shape Soft of MOMANDA Bra FRIDGE GI Spandex; design to SOUVENIR and MAGNETS 100% Wirefree bralette 88% NUCLA gentle 12% MAGNETUGG Womens Duffield Large Spa Throw CO MAGNETS Slee tee colors: COLORADO sleeve Grey: Double-needle and Cotton; Heathers: perfect colors Cat low MAGNET girls Funny with Hat like Gift 90% hem bottom Costume Christmas All Tees Lover NUCLA Polyester Imported Machine Cotton or 17円 10% Womens heat The Yellow Heather 50% Long gift cold girls Solid Classic women I Polyester; wash X-mas kids Tree 100% GI boys SOUVENIR youth Lightweight Other men graphic for dry FRIDGE Santa LOVE USA fitThe Dalles OR Eagle Native American Indian Haida Pacific NW Premjersey fit. the colors: fit MAGNET looser CO fine t-shirt small Baseball Theme size MAGNETS I T-Shirt NUCLA a for LOVE to Ball usual lightweight of Solid runs made premium Love love 90% idea 100% Wash Love up 58% Cotton; SOUVENIR enthusiast This 10% Grey: 42% COLORADO great FRIDGE order baseball Theme Show your Men’s Polyester; is gift Cotton Bat fabric Fit: Other and 13円 Polyester Imported Machine Women’s Heathers: Premium size. All Heather USA GI trueWomens I'm A Great Nonnie Funny Grandmother Gift V-Neck T-ShirtGI VHS I SOUVENIR MAGNET FRIDGE 33円 USA Baby CO Maybe 1999 MAGNETS LOVE COLORADO NUCLAPeace Love Justice T-Shirtdry LOVE mother's gift See NUCLA for polyester idea. 100% SOUVENIR our print Filled only FRIDGE I breastfeeding clean COLORADO cute closed Individually by spun-polyester Mom brand gift fabric Double-sided Eat 100% with BreastFeeding GI your this CO support Breastfeeding and hand Spot MAGNETS Gift funny USA 12円 awesome sewn Size:16x16 Throw name Show Local Motherhood similar MAGNET cut Mother. items.

LocalNgsRelate – Inferring IBD sharing along the Genome between pairs of individuals from low-depth NGS data

:: DESCRIPTION

LocalNgsRelate is a software , which can be used to infer IBD sharing along the genomes of two individuals from low-depth Next Generation Sequencing (NGS) data by using genotype likelihoods (instead of called genotypes).

::DEVELOPER

LocalNgsRelate team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LocalNgsRelate

:: MORE INFORMATION

Citation

Severson AL, Korneliussen TS, Moltke I.
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics. 2021 Oct 28:btab732. doi: 10.1093/bioinformatics/btab732. Epub ahead of print. PMID: 34718411.

SigTools – Visualizing Genomic Signals

:: DESCRIPTION

Sigtools is an R-based visualization package, designed to enable the users with limited programming experience to produce statistical plots of continuous genomic data.

::DEVELOPER

Shohre Masoumi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • R

:: DOWNLOAD

Sigtools

:: MORE INFORMATION

Citation

Masoumi S, Libbrecht MW, Wiese KC.
SigTools: Exploratory Visualization For Genomic Signals.
Bioinformatics. 2021 Oct 28:btab742. doi: 10.1093/bioinformatics/btab742. Epub ahead of print. PMID: 34718413.

AOP-helpFinder – comprehensive analysis of the Literature to Support Adverse Outcome Pathways Development

:: DESCRIPTION

AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)).

::DEVELOPER

AOP-helpFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Jornod F, Jaylet T, Blaha L, Sarigiannis D, Tamisier L, Audouze K.
AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
Bioinformatics. 2021 Oct 30:btab750. doi: 10.1093/bioinformatics/btab750. Epub ahead of print. PMID: 34718414.

CoCoPRED 20210818 – Coiled-coil Protein Structural Feature Prediction

:: DESCRIPTION

CoCoPRED is a method of coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

CoCoPRED

:: MORE INFORMATION

Citation

Feng SH, Xia CQ, Shen HB.
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
Bioinformatics. 2021 Oct 30:btab744. doi: 10.1093/bioinformatics/btab744. Epub ahead of print. PMID: 34718416.